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  "source_key": "/results/test_primary/falsification/verdict",
  "value": "adds nothing beyond the curve (falsified)"
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/genes/dropped",
  "value": [
   "SELP"
  ]
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/genes/kept",
  "value": [
   "MS4A1",
   "CD22",
   "TNFRSF13C",
   "CD3E",
   "CD3D",
   "CD3G",
   "CD2",
   "CD5",
   "IL2RB",
   "KLRD1",
   "NCAM1",
   "SIRPA",
   "ITGAX",
   "NCR1",
   "FCGR3A",
   "KLRF1",
   "KLRC1",
   "SH2D1B",
   "CD6",
   "CD28"
  ]
 },
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  "source_file": "outputs/v3/E2/REPORT.md",
  "source_key": "line 3 ('Genes kept: MS4A1, ... CD28': 20 names; = length of /genes/kept in E2_results.json)",
  "value": 20
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/gene_scaling/eps1_vs_eps0.5/evidence/share_linear",
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/gene_scaling/eps1_vs_eps0.5/score/share_linear",
  "value": 0.064057
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/thinning/eps0.1_vs_eps0.05/evidence/median_rho",
  "value": 0.748442
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/thinning/eps0.1_vs_eps0.05/score/median_rho",
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  "value": 0.046
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  "source_key": "/results/test_primary/linearity/thinning/eps0.4_vs_eps0.2/score/share_linear",
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/thinning/eps0.8_vs_eps0.4/evidence/median_rho",
  "value": 1.167746
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/thinning/eps0.8_vs_eps0.4/evidence/share_linear",
  "value": 0.076
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  "source_file": "outputs/v3/E2/E2_results.json",
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  "value": 1.249549
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  "value": 0.091
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  "value": 1.059783
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/linearity/thinning/eps0.8_vs_eps0.4/z/share_linear",
  "value": 0.0
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/n_cases",
  "value": 23116
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_primary/n_cells",
  "value": 1000
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_secondary_15078/n_cells",
  "value": 250
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/results/test_secondary_15078/falsification/verdict",
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 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/z_probe/C",
  "value": 100.0
 },
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  "source_file": "outputs/v3/E2/E2_results.json",
  "source_key": "/z_probe/C_grid/4/val_accuracy",
  "value": 0.997707
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/D_R1/ci95/1",
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  "source_key": "/H3a/test_primary/all/stats/D_R1/ci95/0",
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/D_R1/per_donor/13272",
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/D_R1/per_donor/19593",
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/D_R1/margin",
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/D_R1/point",
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  "source_key": "/H3a/test_primary/all/stats/D_R1/verdict",
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  "value": -0.4408
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  "source_file": "outputs/v3/E3/E3_results.json",
  "source_key": "/H3a/test_primary/all/stats/Dlog_R1/per_donor/13272",
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 "E4.test_primary.F5_vs_F2@0.9.decision": {
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  "source_key": "/splits/test_primary/E4/comparisons/F5_vs_F2@0.9/decision",
  "value": "equivalent"
 },
 "E4.test_primary.F5_vs_F2@0.9.donor_13272": {
  "source_file": "outputs/v3/E4/E4_results.json",
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 "E4.test_primary.F5_vs_F2@0.9.donor_19593": {
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 "E4.test_primary.F5_vs_F2@0.9.point": {
  "source_file": "outputs/v3/E4/E4_results.json",
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 },
 "E4.test_primary.F5_vs_F4@0.8.donor_13272": {
  "source_file": "outputs/v3/E4/E4_results.json",
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 },
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  "source_file": "outputs/v3/E4/E4_results.json",
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  "value": "loss"
 },
 "E4.test_primary.F5_vs_comparator@0.8.donor_13272": {
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 },
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 },
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  "source_file": "outputs/v3/E4/E4_results.json",
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 },
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  "source_file": "outputs/v3/E4/E4_results.json",
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  "value": 0.01830140728918989
 },
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  "source_file": "outputs/v3/E4/E4_results.json",
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  "value": -0.0036069096306590746
 },
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 },
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 },
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  "value": 0.015227084357893883
 },
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 },
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 },
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 },
 "E4.test_primary.v3_primary_key.F5_vs_comparator@0.8.ci95_low": {
  "source_file": "outputs/v3/E4/E4_results.json",
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  "value": -0.16097607874681555
 },
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  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/splits/test_primary/v3_primary/comparisons/F5_vs_comparator@0.8/decision",
  "value": "loss"
 },
 "E4.test_primary.v3_primary_key.F5_vs_comparator@0.8.point": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/splits/test_primary/v3_primary/comparisons/F5_vs_comparator@0.8/point",
  "value": -0.11251038093792343
 },
 "E4.trust_untestable": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_untestable",
  "value": false
 },
 "E4.trust_val.L0.protein_regressor": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L0/protein_regressor",
  "value": 0.813822
 },
 "E4.trust_val.L0.teddy_rna_head": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L0/teddy_rna_head",
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 },
 "E4.trust_val.L1.protein_regressor": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L1/protein_regressor",
  "value": 0.813822
 },
 "E4.trust_val.L1.teddy_rna_head": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L1/teddy_rna_head",
  "value": 0.782708
 },
 "E4.trust_val.L2.protein_regressor": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L2/protein_regressor",
  "value": 0.498515
 },
 "E4.trust_val.L2.teddy_rna_head": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L2/teddy_rna_head",
  "value": 0.828938
 },
 "E4.trust_val.L3.protein_regressor": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L3/protein_regressor",
  "value": 0.498515
 },
 "E4.trust_val.L3.teddy_rna_head": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/trust_val/L3/teddy_rna_head",
  "value": 0.782708
 },
 "E4.val_endpoint.F2.mean_L0_L3_at_0.8": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/val_endpoint/F2/0.8/mean_L0_L3",
  "value": 0.877892
 },
 "E4.val_endpoint.F3.mean_L0_L3_at_0.8": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/val_endpoint/F3/0.8/mean_L0_L3",
  "value": 0.907165
 },
 "E4.val_endpoint.F5.mean_L0_L3_at_0.8": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/val_endpoint/F5/0.8/mean_L0_L3",
  "value": 0.877021
 },
 "E4.verdict.field_effect.decision": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/verdict/field_effect/decision",
  "value": "inconclusive"
 },
 "E4.verdict.key_validity_flag": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/verdict/key_validity_flag",
  "value": true
 },
 "E4.verdict.primary.decision": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/verdict/primary/decision",
  "value": "loss"
 },
 "E4.verdict.primary.outcome": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/verdict/primary/outcome",
  "value": "field hurts"
 },
 "E4.verdict.summary": {
  "source_file": "outputs/v3/E4/E4_results.json",
  "source_key": "/verdict/summary",
  "value": "primary F5 vs F3 at 0.8: loss (field hurts), point -0.0815 [-0.1380, -0.0535]; field effect F5 vs F2: inconclusive (inconclusive), point +0.0034 [-0.0007, +0.0103]. E4 key kappa vs annotation on test_primary 0.767 < 0.85, so the v3 primary key is reported with equal prominence: primary F5 vs F3 at 0.8: loss (field hurts), point -0.1125 [-0.1610, -0.0687]; field effect F5 vs F2: inconclusive (inconclusive), point +0.0014 [-0.0036, +0.0105]"
 },
 "E5.G_nkt_pair.layer_12": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/curves/pair~1nkt/G/median/12",
  "value": 0.5032142323504291
 },
 "E5.G_nkt_pair.layer_5": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/curves/pair~1nkt/G/median/5",
  "value": 0.28549582243197835
 },
 "E5.S1.L_E5": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/L_E5",
  "value": 2
 },
 "E5.S1.L_probe_argmin_gap_ratio": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/L_probe_argmin_gap_ratio",
  "value": 9
 },
 "E5.S1.ci_high": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/ci_two_stage/1",
  "value": -0.1968284861325248
 },
 "E5.S1.ci_low": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/ci_two_stage/0",
  "value": -0.22926723055800846
 },
 "E5.S1.donor_13272": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/per_donor_dG/13272",
  "value": -0.22360008348015847
 },
 "E5.S1.donor_19593": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/per_donor_dG/19593",
  "value": -0.20756143138025174
 },
 "E5.S1.holds": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/holds",
  "value": true
 },
 "E5.S1.median_dG": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S1_localised_nkt_attenuation/median_dG",
  "value": -0.21698218871590078
 },
 "E5.S2.holds": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S2_lookalike_specificity/holds",
  "value": false
 },
 "E5.S3.head_passes_less": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/secondary/S3_head_transmission/head_passes_less",
  "value": false
 },
 "E5.S4.holds_at_eps_primary": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S4_linearity/holds_at_eps_primary",
  "value": true
 },
 "E5.S4.linear_range_largest_eps": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S4_linearity/linear_range_largest_eps",
  "value": 0.02
 },
 "E5.S5_float64.n_cases": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S5_float64_check/n_cases",
  "value": 79
 },
 "E5.S5_float64.pass_share_1e-2": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S5_float64_check/pass_share/0.01",
  "value": 1.0
 },
 "E5.S5_float64.pass_share_1e-3": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S5_float64_check/pass_share/0.001",
  "value": 1.0
 },
 "E5.S6_float64_jvp_max_rel_diff": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/S6_float64_jvp_max_rel_diff",
  "value": 1.635037616693331e-05
 },
 "E5.cells.random_rule": {
  "source_file": "registration/addenda/E5.json",
  "source_key": "/secondary_analyses/random_cells",
  "value": "per primary donor 100 test_primary NK / T cells in no E3 pair, class proportions and token-count quintiles matched to the donor's E5 cells (seeds.e5_cells generator); a quintile with too few cells is filled at random from the donor's other cells of the class (logged)"
 },
 "E5.endpoint.agreement_within_margin": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/agreement_within_margin",
  "value": false
 },
 "E5.endpoint.comparator_layer_no_gdT158": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/comparator_layer_no_gdT158",
  "value": 9
 },
 "E5.endpoint.l_star": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/l_star",
  "value": 11
 },
 "E5.endpoint.l_star_bootstrap_share": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/l_star_bootstrap_share_two_stage",
  "value": 0.9775
 },
 "E5.endpoint.median_log_gain_at_l_star": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/median_log_gain_at_l_star",
  "value": -0.7059404997446768
 },
 "E5.endpoint.specificity_vs_rand.ci_high": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/ci_two_stage/1",
  "value": 0.17391107909717332
 },
 "E5.endpoint.specificity_vs_rand.ci_low": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/ci_two_stage/0",
  "value": -0.006922886831434572
 },
 "E5.endpoint.specificity_vs_rand.diff": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/diff",
  "value": 0.11518210324665956
 },
 "E5.endpoint.specificity_vs_rand.donor_13272": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/per_donor/13272",
  "value": 0.11714680851501047
 },
 "E5.endpoint.specificity_vs_rand.donor_19593": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/per_donor/19593",
  "value": 0.08732705593824264
 },
 "E5.endpoint.specificity_vs_rand.verdict": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/specificity_vs_rand/verdict",
  "value": "inconclusive"
 },
 "E5.endpoint.verdict": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_endpoint/verdict",
  "value": "JVP not validated (registered check failed): E5 stops; registered reading: a linear-response description is not valid at this scale. Note: the float64 version of the same check passes (S5), so the failure is float32 rounding; see the addendum's infeasibilities"
 },
 "E5.jvp_check.eps1e-2.n_cases": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_jvp_check/0.01/n_cases",
  "value": 571
 },
 "E5.jvp_check.eps1e-2.pass_share": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_jvp_check/0.01/pass_share",
  "value": 1.0
 },
 "E5.jvp_check.eps1e-3.n_cases": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_jvp_check/0.001/n_cases",
  "value": 2671
 },
 "E5.jvp_check.eps1e-3.pass_share": {
  "source_file": "outputs/v3/E5/E5_results.json",
  "source_key": "/registered_jvp_check/0.001/pass_share",
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  "value": -0.06239875705705558
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  "value": -0.048120100750312894
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  "value": -0.029103214861130766
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  "value": -0.0426650716770729
 },
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  "source_key": "/secondary/S8_same_cell_fit_max",
  "value": 9.9260314991099e-15
 },
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  "source_file": "registration/addenda/E5M.json",
  "source_key": "/leakage_check/passed",
  "value": true
 },
 "E5M.cells_used": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/compute/cells",
  "value": "60 pair + 40 random E5 cells per primary donor"
 },
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  "source_key": "/pipeline_checks/Kz_full_column_rank_share",
  "value": 1.0
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  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/pipeline_checks/clamp_vs_direct_tok_max_abs_diff",
  "value": 1.044003026806628e-07
 },
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  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/pipeline_checks/clamp_vs_frozen_train_clamp_max_abs_diff/tok",
  "value": 1.4621022175614895e-07
 },
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  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/pipeline_checks/r_tok_same_cell_fit_max",
  "value": 9.9260314991099e-15
 },
 "E5M.control.note": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/positive_control/note",
  "value": "by construction (O_head's K_O by forward mode and its clamp map by reverse mode, both of the same head at z_12): it checks the derivative code, not the pooling decomposition; the decomposition is checked by pipeline_checks (clamp_vs_direct_*: K_O - H K_z against the observer's JVP along the pooling-discarded part; clamp_vs_frozen_train_clamp; lam12_reverse_vs_primary), reported, not deciding"
 },
 "E5M.control.passed": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/positive_control/passed",
  "value": true
 },
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  "source_key": "/positive_control/r_head_max",
  "value": 6.022286373224713e-07
 },
 "E5M.control.tol": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/positive_control/tol",
  "value": 0.001
 },
 "E5M.dd_tok_minus_rand.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/dd_tok_minus_rand/ci_two_stage/1",
  "value": -0.004160104512378435
 },
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  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/dd_tok_minus_rand/ci_two_stage/0",
  "value": -0.0614819763695918
 },
 "E5M.dd_tok_minus_rand.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/dd_tok_minus_rand/per_donor/13272",
  "value": -0.04701728906391983
 },
 "E5M.dd_tok_minus_rand.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/dd_tok_minus_rand/per_donor/19593",
  "value": -0.021243927932857412
 },
 "E5M.dd_tok_minus_rand.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/dd_tok_minus_rand/value",
  "value": -0.041274319337057
 },
 "E5M.declared.S4_anm_status": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/secondary/S4_anm_status",
  "value": "ANM analysis.analyze_factorization(K_z, K_O, Gamma = I_d, Lambda = H_clamp,O) per cell and observer at (atol, rtol) in [[0.0, 0.0001], [0.0, 0.05]]: counts of overall, source-kernel and factorization statuses (source kernel expected NOT_INFORMATIVE when K_z has full column rank)"
 },
 "E5M.declared.anm_framing": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/anm_framing",
  "value": "z_12 is a DECLARED candidate retained state tested against DECLARED readouts. With m <= 21 source columns and d = 512, K_z has full column rank, so first-order kernel inclusion is automatic and NOT_INFORMATIVE (any K_O equals (K_O pinv K_z) K_z); the informative test is the residual of an H fixed without the tested responses (ANM paper SI; referee audit 2026-09-16). Primary H = ANM's own estimator H = Lambda pinv(Gamma) from clamps of the candidate state alone (analysis.py: 'Never use Ko or held-out endpoints to fit H'). The readout-visible quotient R_T/(R_T cap ker C_T) = C_T R_T has rank <= the readout dimension (4) and is reported only as a diagnostic; it is never used as the state."
 },
 "E5M.declared.cells": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/cells/site4",
  "value": "E5's registered cell set (registration E5.cells, E5 addendum 'cells': unique test_primary cells of E3's within-donor NK-T pairs under the v3 primary key, <= 200 per donor; E5 secondary 'random_cells': per donor 100 matched test_primary NK/T cells in no pair), read from E5's e5_cells.npz (or rebuilt with E5's own select code). Used (GPU budget): per primary donor the first 60 pair cells and the first 40 random cells of E5's seeded processing order (a seeded random subset; 200 cells). Processing order = E5's order restricted to these cells. A cell without any declared gene present has no column and is excluded (counted)."
 },
 "E5M.declared.fd_gate": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/derivatives/fd_gate",
  "value": "central finite differences through the module's own layers at eps in [0.01, 0.02] (unit input push) on the 3 columns of the first present gene of the first 100 cells of the order, and on every column of the first 10; targets z_12 (raw), O_tok, O_head, O_rand (standardised); the gate derivative is the Richardson extrapolation (4 D(0.01) - D(0.02)) / 3 of the two central differences; pass = relative error <= 0.05 and cosine >= 0.99; validated if the pass share is >= 0.95 for every target; each eps alone is reported; otherwise 'JVP not validated' and no verdict"
 },
 "E5M.declared.genes": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/sources/genes",
  "value": "the 7 declared NK/T genes of E5's nkt push, in this order: CD3E, CD3D, NCAM1, KLRD1, NCR1, FCGR3A, KLRF1 (Ensembl ids by E5's gene reference; tokens present in the cell's 2,048-token input)"
 },
 "E5M.declared.scope": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/hypothesis/scope",
  "value": "first order (JVP) at the cells' own inputs, the declared sources and observers only; two primary donors (the interval reflects the observed donors); a PASS says nothing about other observers or larger pushes"
 },
 "E5M.declared.verdicts.PASS_SUFFICIENT": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/hypothesis/verdicts/PASS_SUFFICIENT",
  "value": "H5M falsified by equivalence AND level two-stage upper bound < margin (on pair cells less than 5% of O_tok's response norm flows through the pooling-discarded part; the clamp residual is an exact decomposition, validated by the FD gate and the positive control): z_12 suffices for this observer at first order, so the NK-T loss is in our head, not in pooling"
 },
 "E5M.declared.verdicts.REJECT_SUFFICIENCY": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/hypothesis/verdicts/REJECT_SUFFICIENCY",
  "value": "H5M supported: pooling to z_12 discards information this independent observer uses on look-alike cells, more than on matched random cells and beyond a random token observer"
 },
 "E5M.delta_head.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_head/ci_two_stage/1",
  "value": 1.1027857647039239e-08
 },
 "E5M.delta_head.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_head/ci_two_stage/0",
  "value": -1.579407686274851e-08
 },
 "E5M.delta_head.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_head/per_donor/13272",
  "value": 5.823954886774851e-09
 },
 "E5M.delta_head.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_head/per_donor/19593",
  "value": -5.938529423245115e-09
 },
 "E5M.delta_head.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_head/value",
  "value": -2.9724807030595966e-09
 },
 "E5M.delta_rand.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_rand/ci_two_stage/1",
  "value": 0.01169247662372487
 },
 "E5M.delta_rand.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_rand/ci_two_stage/0",
  "value": -0.021386956373392593
 },
 "E5M.delta_rand.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_rand/per_donor/13272",
  "value": -0.001102810191381115
 },
 "E5M.delta_rand.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_rand/per_donor/19593",
  "value": -0.007859228059056103
 },
 "E5M.delta_rand.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_rand/value",
  "value": -0.0013906940274180102
 },
 "E5M.delta_tok.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_tok/ci_two_stage/1",
  "value": -0.0109808611177378
 },
 "E5M.delta_tok.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_tok/ci_two_stage/0",
  "value": -0.06239883119730233
 },
 "E5M.delta_tok.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_tok/per_donor/13272",
  "value": -0.04812009925530095
 },
 "E5M.delta_tok.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_tok/per_donor/19593",
  "value": -0.029103155991913515
 },
 "E5M.delta_tok.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/delta_tok/value",
  "value": -0.04266501336447501
 },
 "E5M.fd.0.01.O_head.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.01~1O_head/pass_share",
  "value": 1.0
 },
 "E5M.fd.0.01.O_rand.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.01~1O_rand/pass_share",
  "value": 1.0
 },
 "E5M.fd.0.01.O_tok.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.01~1O_tok/pass_share",
  "value": 1.0
 },
 "E5M.fd.0.01.z_12.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.01~1z_12/pass_share",
  "value": 1.0
 },
 "E5M.fd.0.02.O_head.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.02~1O_head/pass_share",
  "value": 0.9859943977591037
 },
 "E5M.fd.0.02.O_rand.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.02~1O_rand/pass_share",
  "value": 1.0
 },
 "E5M.fd.0.02.O_tok.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.02~1O_tok/pass_share",
  "value": 0.9943977591036415
 },
 "E5M.fd.0.02.z_12.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/0.02~1z_12/pass_share",
  "value": 1.0
 },
 "E5M.fd.cos_tol": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/cos_tol",
  "value": 0.99
 },
 "E5M.fd.decides": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/decides",
  "value": "richardson"
 },
 "E5M.fd.rel_tol": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/rel_tol",
  "value": 0.05
 },
 "E5M.fd.required_pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/required_pass_share",
  "value": 0.95
 },
 "E5M.fd.richardson.O_head.n": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_head/n",
  "value": 357
 },
 "E5M.fd.richardson.O_head.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_head/pass_share",
  "value": 1.0
 },
 "E5M.fd.richardson.O_rand.n": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_rand/n",
  "value": 357
 },
 "E5M.fd.richardson.O_rand.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_rand/pass_share",
  "value": 1.0
 },
 "E5M.fd.richardson.O_tok.n": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_tok/n",
  "value": 357
 },
 "E5M.fd.richardson.O_tok.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1O_tok/pass_share",
  "value": 1.0
 },
 "E5M.fd.richardson.z_12.n": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1z_12/n",
  "value": 357
 },
 "E5M.fd.richardson.z_12.pass_share": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/by_derivative_target/richardson~1z_12/pass_share",
  "value": 1.0
 },
 "E5M.fd.validated": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/fd_gate/validated",
  "value": true
 },
 "E5M.hypothesis.H5M": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/hypothesis/H5M",
  "value": "on NK-T pair cells the clamp-H residual of O_tok exceeds that on matched random cells: Delta_tok >= 0.05 with the common win rule (two-stage lower bound > 0, >= 0.025 in each primary donor), and it exceeds the random-observer null: DD_rand has a two-stage lower bound > 0"
 },
 "E5M.hypothesis.falsification": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/hypothesis/falsification",
  "value": "H5M is falsified if Delta_tok is 'equivalent' (two-stage 95% interval inside (-0.05, 0.05)) or a common-rule 'loss'"
 },
 "E5M.level_tok_pair.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_pair/ci_two_stage/1",
  "value": 0.09632023218180566
 },
 "E5M.level_tok_pair.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_pair/ci_two_stage/0",
  "value": 0.07122813206774928
 },
 "E5M.level_tok_pair.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_pair/per_donor/13272",
  "value": 0.08134060459246556
 },
 "E5M.level_tok_pair.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_pair/per_donor/19593",
  "value": 0.08735014612309022
 },
 "E5M.level_tok_pair.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_pair/value",
  "value": 0.08463629315627211
 },
 "E5M.level_tok_random.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_random/ci_two_stage/1",
  "value": 0.1421032876216915
 },
 "E5M.level_tok_random.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_random/ci_two_stage/0",
  "value": 0.09794725335718912
 },
 "E5M.level_tok_random.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_random/per_donor/13272",
  "value": 0.1294607038477665
 },
 "E5M.level_tok_random.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_random/per_donor/19593",
  "value": 0.11645330211500374
 },
 "E5M.level_tok_random.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/level_tok_random/value",
  "value": 0.12730130652074712
 },
 "E5M.margin": {
  "source_file": "registration/addenda/E5M.json",
  "source_key": "/declared/statistics/margin",
  "value": 0.05
 },
 "E5M.median.head.pair": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/head~1pair",
  "value": 1.0788678469396348e-07
 },
 "E5M.median.head.random": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/head~1random",
  "value": 1.1085926539702308e-07
 },
 "E5M.median.rand.pair": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/rand~1pair",
  "value": 0.06699805883494457
 },
 "E5M.median.rand.random": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/rand~1random",
  "value": 0.06838875286236258
 },
 "E5M.median.tok.pair": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/tok~1pair",
  "value": 0.08463629315627211
 },
 "E5M.median.tok.random": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/medians/tok~1random",
  "value": 0.12730130652074712
 },
 "E5M.power_rand_pair.ci95_high": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/power_rand_pair/ci_two_stage/1",
  "value": 0.07335889268805708
 },
 "E5M.power_rand_pair.ci95_low": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/power_rand_pair/ci_two_stage/0",
  "value": 0.05592072053321284
 },
 "E5M.power_rand_pair.donor_13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/power_rand_pair/per_donor/13272",
  "value": 0.062229357789320705
 },
 "E5M.power_rand_pair.donor_19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/power_rand_pair/per_donor/19593",
  "value": 0.06891605994013264
 },
 "E5M.power_rand_pair.value": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/contrasts/power_rand_pair/value",
  "value": 0.06699805883494457
 },
 "E5M.res.addendum_committed": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registration_check/addendum_committed",
  "value": true
 },
 "E5M.res.addendum_sha256": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/addendum_sha256",
  "value": "65ab9efeb7e5aa650d07a59ff02c1362b8b6f7201406b2409fbcb6d1b91ea4da"
 },
 "E5M.res.analysed.pair.13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/by_role_donor/pair~113272",
  "value": 60
 },
 "E5M.res.analysed.pair.19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/by_role_donor/pair~119593",
  "value": 58
 },
 "E5M.res.analysed.random.13272": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/by_role_donor/random~113272",
  "value": 39
 },
 "E5M.res.analysed.random.19593": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/by_role_donor/random~119593",
  "value": 38
 },
 "E5M.res.code": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/code",
  "value": "INCONCLUSIVE"
 },
 "E5M.res.code_matches_addendum": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registration_check/code_matches_addendum",
  "value": true
 },
 "E5M.res.columns_per_cell.max": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/columns_per_cell/max",
  "value": 18
 },
 "E5M.res.columns_per_cell.median": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/columns_per_cell/median",
  "value": 9.0
 },
 "E5M.res.columns_per_cell.min": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/columns_per_cell/min",
  "value": 3
 },
 "E5M.res.delta_tok_rule": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/delta_tok_rule",
  "value": "inconclusive"
 },
 "E5M.res.exceeds_rand_null": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/exceeds_rand_null",
  "value": false
 },
 "E5M.res.final": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/final",
  "value": true
 },
 "E5M.res.git_head": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/code/git_head",
  "value": "2a55f819851e1b99a32723f17648c3e0d8817d4b"
 },
 "E5M.res.level_condition": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/level_condition",
  "value": false
 },
 "E5M.res.margin": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/margin",
  "value": 0.05
 },
 "E5M.res.n_boot": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/n_boot",
  "value": 2000
 },
 "E5M.res.n_cells_analysed": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/n_cells_analysed",
  "value": 195
 },
 "E5M.res.n_cells_done": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/n_cells_done",
  "value": 200
 },
 "E5M.res.n_cells_selected": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/n_cells_selected",
  "value": 200
 },
 "E5M.res.n_cells_without_columns": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/n_cells_without_columns",
  "value": 5
 },
 "E5M.res.verdict": {
  "source_file": "outputs/v3/E5M/E5M_results.json",
  "source_key": "/registered/verdict",
  "value": "inconclusive (Delta_tok neither win, loss nor equivalent)"
 },
 "E6.E1.1a.closure_engine_vs_recoded.closure_Q1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/closure_engine_vs_recoded/closure_Q1/pooled",
  "value": 0
 },
 "E6.E1.1a.closure_engine_vs_recoded.closure_Q2": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/closure_engine_vs_recoded/closure_Q2/pooled",
  "value": 0
 },
 "E6.E1.1a.engine_events_rejected": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/engine_events_rejected",
  "value": 0
 },
 "E6.E1.1a.engine_vs_mean_rule.Q1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/engine_vs_mean_rule/Q1/pooled",
  "value": 0
 },
 "E6.E1.1a.engine_vs_mean_rule.Q2": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/engine_vs_mean_rule/Q2/pooled",
  "value": 0
 },
 "E6.E1.1a.engine_vs_mean_rule.Q3": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/engine_vs_mean_rule/Q3/pooled",
  "value": 0
 },
 "E6.E1.1a.passed": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/passed",
  "value": true
 },
 "E6.E1.1a.ranking_identical": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/ranking_identical_anm_vs_rule",
  "value": true
 },
 "E6.E1.1a.reduced.bridge_passed": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/sensitivity_reduced_panels/bridge_passed",
  "value": true
 },
 "E6.E1.1a.reduced.engine_vs_mean_rule_Q1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/sensitivity_reduced_panels/engine_vs_mean_rule/Q1_red/pooled",
  "value": 123
 },
 "E6.E1.1a.replicates": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/replication/replicates",
  "value": true
 },
 "E6.E1.1a.zero_every_donor": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/E1.1a/replication/e6_zero_mismatches_every_donor",
  "value": true
 },
 "E6.addendum.checked_utc": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/revision/checked_at_build/checked_utc",
  "value": "2026-10-01T10:40:07Z"
 },
 "E6.addendum.contamination.answer": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/contamination/answer",
  "value": "likely yes"
 },
 "E6.addendum.endpoints.not_run": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/endpoints/not_run",
  "value": "E1.1b-d, E1.3, E1.5, Q2 / Q3 accuracy endpoints, the MLP, E1's sensitivity panels"
 },
 "E6.addendum.outputs_v3_E6_exists_at_build": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/revision/checked_at_build/exists",
  "value": false
 },
 "E6.addendum.revision.version": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/revision/addendum_version",
  "value": 2
 },
 "E6.addendum.statistics.v3_direction": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/statistics/v3_direction",
  "value": "the sign of the E1 site4 point difference on E1's primary split (test_primary) and primary key, read by the runner at report time from outputs/v3/E1/E1_results.json (its sha256 is recorded; a smoke E1 file is refused in the real run). The same direction is used for both E6 keys. A v3 point of exactly 0 gives 'no v3 direction' (the E6 interval is reported)"
 },
 "E6.annotation_map.n_labels": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/annotation_map/n_labels",
  "value": 31
 },
 "E6.annotation_map.rederivation_n_agree": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/annotation_map/independent_rederivation/n_agree",
  "value": 31
 },
 "E6.annotation_only.AURC.anm.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/anm/ci95/1",
  "value": 0.9948467828662197
 },
 "E6.annotation_only.AURC.anm.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/anm/ci95/0",
  "value": 0.9680827048198744
 },
 "E6.annotation_only.AURC.anm.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/anm/point",
  "value": 0.9838941754078271
 },
 "E6.annotation_only.AURC.classifier.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/classifier/ci95/1",
  "value": 0.9907449614778668
 },
 "E6.annotation_only.AURC.classifier.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/classifier/ci95/0",
  "value": 0.9733468877917473
 },
 "E6.annotation_only.AURC.classifier.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/classifier/point",
  "value": 0.9829287102930532
 },
 "E6.annotation_only.AURC.entropy.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/entropy/ci95/1",
  "value": 0.9962992769755009
 },
 "E6.annotation_only.AURC.entropy.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/entropy/ci95/0",
  "value": 0.9891951836744599
 },
 "E6.annotation_only.AURC.entropy.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/entropy/point",
  "value": 0.993369590359622
 },
 "E6.annotation_only.AURC.margin.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/margin/ci95/1",
  "value": 0.9965528264149699
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/margin/ci95/0",
  "value": 0.986253313525225
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/margin/point",
  "value": 0.992627925468175
 },
 "E6.annotation_only.AURC.rule.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/rule/ci95/1",
  "value": 0.9948467828662197
 },
 "E6.annotation_only.AURC.rule.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/rule/ci95/0",
  "value": 0.9680827048198744
 },
 "E6.annotation_only.AURC.rule.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/AURC/rule/point",
  "value": 0.9838941754078271
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/ci95/1",
  "value": 0.009056247987334306
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/ci95/0",
  "value": -0.010209319569016564
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P1",
  "value": 0.008909364430633282
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P2": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P2",
  "value": 0.002101722669220041
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P3": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P3",
  "value": 0.0023242972156675146
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P4": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P4",
  "value": 0.0017413460235148337
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P5": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P5",
  "value": -0.014398732371291412
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P6",
  "value": 0.014547064588646075
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P7": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P7",
  "value": 0.01453123651274757
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.donor_P8": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/per_donor/hao2021_P8",
  "value": -0.02958736707319576
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/e1_decision_rule/verdict",
  "value": "inconclusive"
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.n_donors_same_sign": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/replication/n_donors_same_sign",
  "value": 2
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/point",
  "value": 0.0009654651147739113
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.replication_status": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/replication/status",
  "value": "does not replicate"
 },
 "E6.annotation_only.E1.4a.anm_minus_classifier.v3_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - classifier AURC/replication/v3_point",
  "value": -0.09903977259135843
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/ci95/1",
  "value": -0.0013130409037724806
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/ci95/0",
  "value": -0.021339523207312316
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P1",
  "value": -0.0016397444039568665
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P2": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P2",
  "value": -0.001806060588553926
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P3": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P3",
  "value": -0.00029734755273580493
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P4": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P4",
  "value": -0.0010371716998504033
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P5": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P5",
  "value": -0.04100433317160368
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P6",
  "value": -0.0013291690043841786
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P7": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P7",
  "value": -0.0046949810178340545
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.donor_P8": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/per_donor/hao2021_P8",
  "value": -0.03105020352671728
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.e1_decision_rule": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/e1_decision_rule/verdict",
  "value": "inconclusive"
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.n_donors_same_sign": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/replication/n_donors_same_sign",
  "value": 8
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/point",
  "value": -0.009475414951794936
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/replication/status",
  "value": "replicates"
 },
 "E6.annotation_only.E1.4a.anm_minus_entropy.v3_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - entropy AURC/replication/v3_point",
  "value": -0.003978178762383711
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
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 },
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  "value": -0.018230301469702635
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P1": {
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  "value": -0.0026258219085835144
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P2": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/per_donor/hao2021_P2",
  "value": -0.001824459220177821
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P3": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/per_donor/hao2021_P3",
  "value": -0.00025374385453325043
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P4": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/per_donor/hao2021_P4",
  "value": -0.0006832853204452594
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P5": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/per_donor/hao2021_P5",
  "value": -0.035593147540635695
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.donor_P6": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/per_donor/hao2021_P6",
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 },
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  "source_file": "outputs/v3/E6/E6_results.json",
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 },
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  "source_file": "outputs/v3/E6/E6_results.json",
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 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/e1_decision_rule/verdict",
  "value": "inconclusive"
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.n_donors_same_sign": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/replication/n_donors_same_sign",
  "value": 8
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/point",
  "value": -0.008733750060347933
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.replication_status": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/replication/status",
  "value": "replicates"
 },
 "E6.annotation_only.E1.4a.anm_minus_margin.v3_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - margin AURC/replication/v3_point",
  "value": -0.0015411611352942334
 },
 "E6.annotation_only.E1.4a.anm_minus_rule.ci95_high": {
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  "source_key": "/keys/annotation_only/E1.4a/anm - rule AURC/ci95/1",
  "value": 0.0
 },
 "E6.annotation_only.E1.4a.anm_minus_rule.ci95_low": {
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  "value": 0.0
 },
 "E6.annotation_only.E1.4a.anm_minus_rule.donor_P1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/annotation_only/E1.4a/anm - rule AURC/per_donor/hao2021_P1",
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 },
 "E6.annotation_only.E1.4a.anm_minus_rule.donor_P2": {
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  "value": 0.0
 },
 "E6.annotation_only.E1.4a.anm_minus_rule.donor_P3": {
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 "E6.annotation_only.E1.4a.anm_minus_rule.donor_P4": {
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  "value": -0.02083333333333337
 },
 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.donor_P5": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/per_donor/hao2021_P5",
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 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.donor_P6": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/per_donor/hao2021_P6",
  "value": 0.019607843137254832
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 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.donor_P7": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/per_donor/hao2021_P7",
  "value": 0.0652173913043479
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/per_donor/hao2021_P8",
  "value": 0.044117647058823484
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/e1_decision_rule/verdict",
  "value": "equivalent"
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/replication/n_donors_same_sign",
  "value": 4
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 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/point",
  "value": 0.010000000000000009
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 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.replication_status": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/replication/status",
  "value": "does not replicate"
 },
 "E6.primary.E1.C2.c080.closure_minus_rule_out_decline.v3_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure - rule OUT decline/replication/v3_point",
  "value": 0.05123152709359602
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/closure/out_decline/point",
  "value": 0.8744444444444445
 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/e1_decision_rule_with_guard",
  "value": "equivalent"
 },
 "E6.primary.E1.C2.c080.guard_inscope_ok": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/guard_inscope_ok",
  "value": false
 },
 "E6.primary.E1.C2.c080.inscope_acc_diff": {
  "source_file": "outputs/v3/E6/E6_results.json",
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  "value": -0.010929865556011054
 },
 "E6.primary.E1.C2.c080.rule_out_decline": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/0.80/rule/out_decline/point",
  "value": 0.8644444444444445
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 "E6.primary.E1.C2.cstar.classifier_out_decline": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/classifier/out_decline/point",
  "value": 0.30666666666666664
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  "source_file": "outputs/v3/E6/E6_results.json",
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 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/ci95/0",
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 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.donor_P1": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P1",
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 },
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P2",
  "value": 0.01388888888888884
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.donor_P3": {
  "source_file": "outputs/v3/E6/E6_results.json",
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  "source_file": "outputs/v3/E6/E6_results.json",
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  "value": 0.0
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  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P5",
  "value": 0.0
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.donor_P6": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P6",
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 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.donor_P7": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P7",
  "value": 0.0
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.donor_P8": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/per_donor/hao2021_P8",
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 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.e1_decision_rule": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/e1_decision_rule/verdict",
  "value": "equivalent"
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/point",
  "value": 0.0
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.replication_status": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/replication/status",
  "value": "no v3 direction"
 },
 "E6.primary.E1.C2.cstar.closure_minus_rule_out_decline.v3_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule OUT decline/replication/v3_point",
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 },
 "E6.primary.E1.C2.cstar.closure_out_decline": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure/out_decline/point",
  "value": 0.3055555555555556
 },
 "E6.primary.E1.C2.cstar.e1_rule_with_guard": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/e1_decision_rule_with_guard",
  "value": "equivalent"
 },
 "E6.primary.E1.C2.cstar.guard_inscope_ok": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/guard_inscope_ok",
  "value": false
 },
 "E6.primary.E1.C2.cstar.inscope_acc_diff": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/closure - rule in-scope acc/point",
  "value": -0.011516050063786532
 },
 "E6.primary.E1.C2.cstar.rule_out_decline": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/E1.C2/c*/rule/out_decline/point",
  "value": 0.3055555555555556
 },
 "E6.primary.c_star.ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/coverage_c_star/ci95/1",
  "value": 0.995475625
 },
 "E6.primary.c_star.ci95_low": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/coverage_c_star/ci95/0",
  "value": 0.990374375
 },
 "E6.primary.c_star.point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/coverage_c_star/point",
  "value": 0.993075
 },
 "E6.primary.is_decision_key": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/keys/primary/is_decision_key",
  "value": false
 },
 "E6.registered.failure_rule": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/registered_E6/failure",
  "value": "if annotation vs per-batch gate kappa < 0.70 on the external data, results are reported on the annotation-only key and labelled 'key not validated'"
 },
 "E6.res.addendum_committed": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/state/addendum_committed",
  "value": true
 },
 "E6.res.addendum_sha256": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/addendum_E6_sha256",
  "value": "b82687a7d3fe824668911e4f2f8e7c40f2061554f264452a2c6dea017129f537"
 },
 "E6.res.builder": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/builder",
  "value": "v3_e6_external 2.0"
 },
 "E6.res.code_committed_clean": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/state/code_committed_clean",
  "value": true
 },
 "E6.res.contamination_label": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/contamination_label",
  "value": "RNA possibly seen by TEDDY in pretraining"
 },
 "E6.res.git_head": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/state/git_head",
  "value": "cac4f8ac467ae060454e5e90fca58c5833027fe0"
 },
 "E6.res.n_boot": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/config/n_boot",
  "value": 2000
 },
 "E6.res.n_cells": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/cells/n",
  "value": 40000
 },
 "E6.res.summary.E1.1a": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/E1.1a",
  "value": "pass"
 },
 "E6.res.summary.key": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/key",
  "value": "key not validated (pooled kappa 0.6562; decision key annotation_only)"
 },
 "E6.res.summary.panels": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/panels",
  "value": "primary: the full frozen registered panels for every arm (addendum v2, as E1); sensitivity: reduced panels (never decides)"
 },
 "E6.statistics.replication_rule": {
  "source_file": "registration/addenda/E6.json",
  "source_key": "/statistics/replication_rule",
  "value": "registered: a v3 conclusion replicates if its sign holds in a majority of the external donors (at least 5 of 8 donor points with the v3 sign; an undefined donor value counts against) and the pooled two-stage 95% interval excludes 0 on the same side"
 },
 "E6.summary.reduced.C2_cstar.e6_ci95_high": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/sensitivity_reduced_panels/replication/E1.C2 closure_red - rule_red OUT decline @c*/e6_ci95/1",
  "value": 0.005063935323863843
 },
 "E6.summary.reduced.C2_cstar.e6_point": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/sensitivity_reduced_panels/replication/E1.C2 closure_red - rule_red OUT decline @c*/e6_point",
  "value": 0.0010537407797681642
 },
 "E6.summary.reduced.C2_cstar.status": {
  "source_file": "outputs/v3/E6/E6_results.json",
  "source_key": "/summary/sensitivity_reduced_panels/replication/E1.C2 closure_red - rule_red OUT decline @c*/status",
  "value": "no v3 direction"
 },
 "E7.addendum.anm_template": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/anm_template",
  "value": "ANM v2 discussion: 'Exactly equal retained states give a readout difference beyond measurement error -> reject sufficiency -> separate the violating histories in a revised representation; test it with consumer and interface unchanged.' Selection operates within a supplied candidate library; neither automatic discovery of a missing variable nor a unique state encoding follows."
 },
 "E7.addendum.built_utc": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/built_utc",
  "value": "2026-10-01T22:21:50Z"
 },
 "E7.addendum.can_show": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/can_show",
  "value": "for one fixed consumer, one observable panel and one declared class of mean-preserving state interventions at the layer-11 cut: whether the layer-11 gene-mean is rejected as a sufficient retained state on fresh cells and donors, and whether a declared marker-token augmentation selected on development data gets bounded support there (if so, the first complete reject -> select -> validate step on TEDDY)"
 },
 "E7.addendum.candidates.G_genes": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/candidates/G/genes",
  "value": {
   "CD3D": "CD3",
   "CD3E": "CD3",
   "CD3G": "CD3",
   "KLRD1": "CD94",
   "NCAM1": "CD56",
   "NCR1": "CD335"
  }
 },
 "E7.addendum.candidates.order": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/candidates/order",
  "value": [
   "gene_mean",
   "gene_mean_plus_G",
   "all_token_states"
  ]
 },
 "E7.addendum.cannot_show": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/cannot_show",
  "value": [
   "that RNA lacks NK-T information",
   "that the head improves (the consumer is unchanged; E3 rejected repair on frozen TEDDY)",
   "that any representation is unique or minimal beyond the declared library",
   "transfer to other consumers, layers, observables or intervention classes",
   "behaviour under on-manifold (real-cell) perturbations: these are state interventions, not input histories (ANM v2: 'Propagation imposes the state displacements; the readout alone is measured afresh')",
   "clinical value"
  ]
 },
 "E7.addendum.clamp.norm_dmu_11": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/clamp/norm_dmu_11",
  "value": 0.3320915266020671
 },
 "E7.addendum.constants.bootstrap_seed": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/bootstrap_seed",
  "value": 1
 },
 "E7.addendum.constants.float64_tol": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/float64_tol",
  "value": 0.005
 },
 "E7.addendum.constants.fresh": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/fresh",
  "value": [
   0.25
  ]
 },
 "E7.addendum.constants.kappa": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/kappa",
  "value": 1.0
 },
 "E7.addendum.constants.ladder": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/ladder",
  "value": [
   0.03125,
   0.125,
   0.5
  ]
 },
 "E7.addendum.constants.min_G_present": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/min_G_present",
  "value": 1
 },
 "E7.addendum.constants.min_nonG_tokens": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/min_nonG_tokens",
  "value": 256
 },
 "E7.addendum.constants.n_boot": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_boot",
  "value": 2000
 },
 "E7.addendum.constants.n_clamp": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_clamp",
  "value": 2
 },
 "E7.addendum.constants.n_dev_per_class": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_dev_per_class",
  "value": 100
 },
 "E7.addendum.constants.n_external_per_class_per_donor": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_external_per_class_per_donor",
  "value": 25
 },
 "E7.addendum.constants.n_float64": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_float64",
  "value": 10
 },
 "E7.addendum.constants.n_followup_per_class": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_followup_per_class",
  "value": 100
 },
 "E7.addendum.constants.n_g_only": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_g_only",
  "value": 8
 },
 "E7.addendum.constants.n_matched": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_matched",
  "value": 8
 },
 "E7.addendum.constants.n_push_cells": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_push_cells",
  "value": 50
 },
 "E7.addendum.constants.n_region": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_region",
  "value": 2
 },
 "E7.addendum.constants.n_site4_per_class_per_donor": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_site4_per_class_per_donor",
  "value": 100
 },
 "E7.addendum.constants.n_twin": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/n_twin",
  "value": 8
 },
 "E7.addendum.constants.tol": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/tol",
  "value": 0.05
 },
 "E7.addendum.constants.unit_min": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/unit_min",
  "value": 0.05
 },
 "E7.addendum.consumer": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/consumer",
  "value": "fixed, never trained: E5's validated explicit-attention layer_fn with encoder.layers[11]'s own weights (forward equal to the module's to ~5e-6), mean over the cell's real tokens, then E5's load_head: z / (||z|| + 1e-6) -> MLP -> NB decoder mean at the training-median size factor, / training p95 of measured ADT (the frozen phase-1 head outputs/cite_phase1_official/best.pt, sha256 in inputs)"
 },
 "E7.addendum.disclosure": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/disclosure",
  "value": "The registering session had read the published v3 results (E1-E6, E5-M, including E5-M's per-layer clamp residuals on site4: the head's 0.709 / 0.72 at layer 11), the PR #16 review and the val / train cell counts. Before writing this addendum it ran the architecture check on 3 training cells (one average and one swap patch each, recorded in architecture_check) and counted val primary-key NK/T cells; it computed no patch output on any val or site4 cell before version 1. Version 2 (declared.review_revision_v2) was written after version 1's code smoke on 5 val smoke-pool cells (outside both rosters) and a review check on 4 training cells; no development, follow-up, site4 or external forward of this script had run. Site4 confirmation cells exclude every E3 / E5 / E5-M cell."
 },
 "E7.addendum.eligibility_val.NK.eligible": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/eligibility/NK/eligible",
  "value": 249
 },
 "E7.addendum.eligibility_val.NK.pool": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/eligibility/NK/pool",
  "value": 254
 },
 "E7.addendum.eligibility_val.T.eligible": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/eligibility/T/eligible",
  "value": 2986
 },
 "E7.addendum.eligibility_val.T.pool": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/eligibility/T/pool",
  "value": 2990
 },
 "E7.addendum.external_family.labels": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/external_family/labels",
  "value": [
   "RNA possibly seen by TEDDY in pretraining",
   "key not validated"
  ]
 },
 "E7.addendum.gates.intended_mean_shift_abs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/intended_mean_shift_abs",
  "value": 1e-05
 },
 "E7.addendum.gates.layer12_mean_preserving_gap_units": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/layer12_mean_preserving_gap_units",
  "value": 1e-05
 },
 "E7.addendum.gates.mean_preservation_abs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/mean_preservation_abs",
  "value": 1e-05
 },
 "E7.addendum.gates.module_vs_explicit_abs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/module_vs_explicit_abs",
  "value": 0.0001
 },
 "E7.addendum.gates.official_layer11_gene_mean_abs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/official_layer11_gene_mean_abs",
  "value": 0.001
 },
 "E7.addendum.gates.padded_vs_unpadded_abs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/padded_vs_unpadded_abs",
  "value": 0.0001
 },
 "E7.addendum.gates.padding_patch_gap_units": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/padding_patch_gap_units",
  "value": 1e-06
 },
 "E7.addendum.gates.patch_rows_changed_mismatch": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/patch_rows_changed_mismatch",
  "value": 0
 },
 "E7.addendum.gates.permutation_gap_units": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/constants/gates/permutation_gap_units",
  "value": 1e-05
 },
 "E7.addendum.leakage.passed": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/leakage_check/passed",
  "value": true
 },
 "E7.addendum.leakage.real_core_sha256": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/leakage_check/real_core_sha256",
  "value": "aaaf9ab16cc1722dd373917e23dc49eefb85f580c2369eac60880a52c58a294b"
 },
 "E7.addendum.leakage.site4_poisoned_identical": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/leakage_check/site4_poisoned_identical",
  "value": true
 },
 "E7.addendum.leakage.val_poisoned_differs": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/leakage_check/val_poisoned_differs",
  "value": true
 },
 "E7.addendum.pre_registration_code_test": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/pre_registration_code_test",
  "value": "before this addendum, a first code run used 2 training cells without G tokens (code paths only), then the code ran on 2 annotated training cells (1 NK, 1 T; no val or site4 cell) with an earlier draft that used one-sided twins as the positive control and a magnitude calibrated on them. Median per-cell maxima (panel, gap units): gene-mean 0.014 / 0.065 / 0.166 and gene-mean + G 0.013 / 0.055 / 0.149 at f = 1/32 / 1/8 / 1/2; G witness 0.007 / 0.011 / 0.027; one-sided twins 0.002 / 0.007 / 0.026, so a twin-calibrated magnitude (target 2 tol) would never have been reached: the twin moves the gene-mean by a random-walk sum. The draft was revised to the clamp positive control and the fixed three-magnitude class, and rerun on 3 annotated training cells (2 NK, 1 T) with the clamp at kappa 0.2: median P 0.049 (at the tolerance), median W 0.019, q95 of the per-cell maximum 0.227 (gene-mean) and 0.202 (gene-mean + G). kappa was then set to 1 (the full training NK - T difference, the interpretable NK/T-sized change; 0.2 had no rationale beyond being small); the same 3 cells were rerun on MPS to check the device path (float32 vs float64 within 1e-6). Nothing else changed after these code tests"
 },
 "E7.addendum.question": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/question",
  "value": "TEDDY analog of ANM v2's inverse loop with the consumer fixed: is TEDDY's layer-11 gene-mean a sufficient retained state for the fixed consumer (layer 12 + gene-mean pooling + L2 normalisation + the frozen phase-1 head) on the registered NK/T panel, under a declared class of exact mean-preserving interventions at the layer-11 cut? If it is rejected, does a declared augmentation chosen by a declared rule on development data get bounded support on fresh comparisons?"
 },
 "E7.addendum.review_revision_v2": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/declared/review_revision_v2",
  "value": "addendum version 2, written after an adversarial review and before any development forward; supersedes version 1 (sha256 e14a80ad591edf52da33b37ed7dad68a608efbc7d68f676bffa8c709d278038a, commit 6dc5999). Seen before this revision: version 1's code smoke on 5 val smoke-pool cells (outside both rosters; never development, follow-up or confirmation cells): panel q95 of the per-cell maximum over the development magnitudes 0.139 (gene-mean) and 0.091 (gene-mean + G), median G witness 0.014, median clamp 0.210; score follow-up 0.074 / 0.055; the smoke confirmation family (the same 5 cells) REJECTED_NO_REVISION. Changes, none of which touches the tolerance, units, G, the library, rosters, magnitudes, the selection rule, the rejection criterion or the bootstrap: (1) the patch-region detectability witness R is added and support counts only if it is detected as well as the clamp (the clamp moves every token, the G tokens included, so it could not rule out support of gene-mean + G reached because the consumer does not see the patched non-G tokens); (2) a control failure now makes only a support claim UNINFORMATIVE (version 1 also turned a rejection of the selected candidate into UNINFORMATIVE, although rejections need no control, as when nothing is selected); (3) implementation gates patch_applied and intended_mean_shift (a no-op patch passed every version-1 gate and would have given trivial support); (4) a stopped development record ends E7 (version 1 would have run confirmation and reported that no candidate was selected) and select writes its record once; (5) wording: a G twin differs from its matched patch at the G tokens and their non-G partners. Checked on 4 training cells (the code-test pool, 2 NK + 2 T, float64 CPU) before this revision: every pair patch moves the gene-mean by <= 2.2e-16, candidate-2 matched patches leave the G rows bitwise unchanged, twins differ from their matched patch only at the G tokens and their partners; a version-2 code smoke on the same 4 cells (every stage) passed every gate, with the patch-region witness 0.92-1.00 times the clamp on each cell (so it adds no hurdle the clamp did not already pose on these cells; it closes the logical gap). (1) and (3) can only remove a support claim; (2) lets a rejection of a selected candidate stand; none changes the expected path (null selection, follow-up, rejections)"
 },
 "E7.addendum.rosters.dev.sha256": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/dev/sha256",
  "value": "421c0fb62045b559be87ee58af20f1f04301db3b54792d8d9f1648552b1a2d04"
 },
 "E7.addendum.rosters.followup.sha256": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/followup/sha256",
  "value": "5f8b0f8d63ae2d5951bb4a10f8f79fb5d979bc71dc9c375614216cf18e19eecd"
 },
 "E7.addendum.site4_exclusions.e3_pair_cells_per_donor": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/site4_exclusions/e3_pair_cells_per_donor",
  "value": {
   "13272": 171,
   "19593": 107
  }
 },
 "E7.addendum.site4_exclusions.e5_n_cells": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/site4_exclusions/e5_n_cells",
  "value": 478
 },
 "E7.addendum.smoke_pool.NK.n": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/smoke_pool/NK (length of the list)",
  "value": 49
 },
 "E7.addendum.smoke_pool.T.n": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/rosters/smoke_pool/T (length of the list)",
  "value": 2786
 },
 "E7.addendum.supersedes.addendum_version": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/supersedes/addendum_version",
  "value": 1
 },
 "E7.addendum.supersedes.commit": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/supersedes/commit",
  "value": "6dc5999"
 },
 "E7.addendum.supersedes.sha256": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/supersedes/sha256",
  "value": "e14a80ad591edf52da33b37ed7dad68a608efbc7d68f676bffa8c709d278038a"
 },
 "E7.addendum.title": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/title",
  "value": "E7: TEDDY analog of ANM v2's inverse loop at the layer-11 cut, consumer fixed (Mode A)"
 },
 "E7.addendum.units.n_val_NK": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/n_val_NK",
  "value": 254
 },
 "E7.addendum.units.n_val_T": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/n_val_T",
  "value": 2990
 },
 "E7.addendum.units.panel": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/panel",
  "value": [
   1.5631126553415522,
   1.6140132815739272,
   1.510342871746801,
   1.0891812026030432
  ]
 },
 "E7.addendum.units.predicted_panel_secondary": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/predicted_panel_secondary",
  "value": [
   0.9980812072753906,
   1.1821354404091835,
   1.009444311261177,
   0.7875474281609058
  ]
 },
 "E7.addendum.units.proteins": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/proteins",
  "value": [
   "CD56",
   "CD94",
   "CD335",
   "CD3"
  ]
 },
 "E7.addendum.units.score": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/computed_train_val/units/score",
  "value": 2.5786445114134757
 },
 "E7.addendum.version": {
  "source_file": "registration/addenda/E7.json",
  "source_key": "/addendum_version",
  "value": 2
 },
 "E7.external.G_witness_detected": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/G_witness_detected",
  "value": false
 },
 "E7.external.by_donor_class": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/by_donor_class",
  "value": {
   "hao2021_P1/NK": 25,
   "hao2021_P1/T": 25,
   "hao2021_P2/NK": 25,
   "hao2021_P2/T": 25,
   "hao2021_P3/NK": 25,
   "hao2021_P3/T": 25,
   "hao2021_P4/NK": 25,
   "hao2021_P4/T": 25,
   "hao2021_P5/NK": 25,
   "hao2021_P5/T": 25,
   "hao2021_P6/NK": 25,
   "hao2021_P6/T": 25,
   "hao2021_P7/NK": 25,
   "hao2021_P7/T": 25,
   "hao2021_P8/NK": 25,
   "hao2021_P8/T": 25
  }
 },
 "E7.external.complete": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/complete",
  "value": true
 },
 "E7.external.float64_max_gap": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/float64_max_gap",
  "value": 3.296470636904303e-06
 },
 "E7.external.float64_ok": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/float64_ok",
  "value": true
 },
 "E7.external.implementation_max.intended_mean_shift_abs": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/intended_mean_shift_abs",
  "value": 1.6833655536174774e-07
 },
 "E7.external.implementation_max.layer12_mean_preserving_gap_units": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/layer12_mean_preserving_gap_units",
  "value": 2.2879212667765096e-07
 },
 "E7.external.implementation_max.mean_preservation_abs": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/mean_preservation_abs",
  "value": 1.7881393432617188e-07
 },
 "E7.external.implementation_max.module_vs_explicit_abs": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/module_vs_explicit_abs",
  "value": 1.0013580322265625e-05
 },
 "E7.external.implementation_max.official_layer11_gene_mean_abs": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/official_layer11_gene_mean_abs",
  "value": 0.00039105862379074097
 },
 "E7.external.implementation_max.padded_vs_unpadded_abs": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/padded_vs_unpadded_abs",
  "value": 1.0013580322265625e-05
 },
 "E7.external.implementation_max.padding_patch_gap_units": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/padding_patch_gap_units",
  "value": 0.0
 },
 "E7.external.implementation_max.patch_rows_changed_mismatch": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/patch_rows_changed_mismatch",
  "value": 0
 },
 "E7.external.implementation_max.permutation_gap_units": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_max/permutation_gap_units",
  "value": 2.2879212667765096e-07
 },
 "E7.external.implementation_ok": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/implementation_ok",
  "value": true
 },
 "E7.external.labels": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/labels",
  "value": [
   "RNA possibly seen by TEDDY in pretraining",
   "key not validated"
  ]
 },
 "E7.external.magnitudes": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/magnitudes",
  "value": [
   0.03125,
   0.125,
   0.5,
   0.25
  ]
 },
 "E7.external.median_D_gene_mean.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/ci/1",
  "value": 0.13565352310009426
 },
 "E7.external.median_D_gene_mean.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/ci/0",
  "value": 0.09738010650142855
 },
 "E7.external.median_D_gene_mean.donor_P1.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P1/ci/1",
  "value": 0.12147307172653939
 },
 "E7.external.median_D_gene_mean.donor_P1.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P1/ci/0",
  "value": 0.09195687204986194
 },
 "E7.external.median_D_gene_mean.donor_P1.n_cells": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P1/n_cells",
  "value": 50
 },
 "E7.external.median_D_gene_mean.donor_P1.value": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P1/value",
  "value": 0.10753203875185484
 },
 "E7.external.median_D_gene_mean.donor_P2.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P2/ci/1",
  "value": 0.09840623924538351
 },
 "E7.external.median_D_gene_mean.donor_P2.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P2/ci/0",
  "value": 0.0647191399231353
 },
 "E7.external.median_D_gene_mean.donor_P2.n_cells": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P2/n_cells",
  "value": 50
 },
 "E7.external.median_D_gene_mean.donor_P2.value": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P2/value",
  "value": 0.07765212289481915
 },
 "E7.external.median_D_gene_mean.donor_P3.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P3/ci/1",
  "value": 0.10644482712501745
 },
 "E7.external.median_D_gene_mean.donor_P3.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P3/ci/0",
  "value": 0.08587080533450059
 },
 "E7.external.median_D_gene_mean.donor_P3.n_cells": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P3/n_cells",
  "value": 50
 },
 "E7.external.median_D_gene_mean.donor_P3.value": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P3/value",
  "value": 0.09751616111583311
 },
 "E7.external.median_D_gene_mean.donor_P4.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P4/ci/1",
  "value": 0.11759324019163461
 },
 "E7.external.median_D_gene_mean.donor_P4.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P4/ci/0",
  "value": 0.07469693029955056
 },
 "E7.external.median_D_gene_mean.donor_P4.n_cells": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P4/n_cells",
  "value": 50
 },
 "E7.external.median_D_gene_mean.donor_P4.value": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P4/value",
  "value": 0.09643061506391354
 },
 "E7.external.median_D_gene_mean.donor_P5.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P5/ci/1",
  "value": 0.15687473875500757
 },
 "E7.external.median_D_gene_mean.donor_P5.ci95_low": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P5/ci/0",
  "value": 0.09978373899760931
 },
 "E7.external.median_D_gene_mean.donor_P5.n_cells": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P5/n_cells",
  "value": 50
 },
 "E7.external.median_D_gene_mean.donor_P5.value": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P5/value",
  "value": 0.1389297481386389
 },
 "E7.external.median_D_gene_mean.donor_P6.ci95_high": {
  "source_file": "outputs/v3/E7/E7_results.json",
  "source_key": "/families/external/bounds/median_D_gene_mean/per_donor/hao2021_P6/ci/1",
  "value": 0.1624976324926028
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 "_format": {
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  "source_key": "section 'Numbers'",
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  "value": "2026-10-01T09:04:11Z"
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  "value": 253
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  "source_key": "line 503 (2026-10-01T06:42:46-04:00 local)",
  "value": "2026-10-01T10:42:46Z"
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  "source_key": "line 3 (2026-10-01T01:10:36-04:00 local)",
  "value": "2026-10-01T05:10:36Z"
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  "source_key": "line 200 ([07:06:15] 'report: 195 cells analysed; verdict: inconclusive ...'; local EDT, date 2026-10-01 as line 1)",
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  "source_key": "line 1 (2026-10-01T06:43:09-04:00 local)",
  "value": "2026-10-01T10:43:09Z"
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  "source_key": "line 2 (2026-10-01T07:54:34-04:00 local): first stage that reads external protein and cell types",
  "value": "2026-10-01T11:54:34Z"
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  "source_file": "outputs/v3/E6/progress.log",
  "source_key": "line 1 (2026-10-01T07:54:31-04:00 local)",
  "value": "2026-10-01T11:54:31Z"
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 204 (2026-10-01T18:33:11-04:00 local): 'dev done: 200 cells'",
  "value": "2026-10-01T22:33:11Z"
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 1 (2026-10-01T18:26:38-04:00 local): 'stage develop roster dev'; val donor 18303 only ('family site4' is the unused default argument)",
  "value": "2026-10-01T22:26:38Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 1222 (2026-10-01T19:11:44-04:00 local): 'external done: 400 cells'",
  "value": "2026-10-01T23:11:44Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 818 (2026-10-01T18:54:05-04:00 local): 'stage confirm roster dev family external'",
  "value": "2026-10-01T22:54:05Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 410 (2026-10-01T18:40:17-04:00 local): 'followup done: 200 cells'",
  "value": "2026-10-01T22:40:17Z"
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 207 (2026-10-01T18:33:13-04:00 local): 'stage develop roster followup'; val donor 18303 only",
  "value": "2026-10-01T22:33:13Z"
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 1224 (2026-10-01T19:11:49-04:00 local): 'report: verdict {'code': 'REJECTED_NO_REVISION''",
  "value": "2026-10-01T23:11:49Z"
 },
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  "source_key": "line 206 (2026-10-01T18:33:13-04:00 local): 'select (dev): selected None, stopped None, follow-up required True'",
  "value": "2026-10-01T22:33:13Z"
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  "source_key": "line 412 (2026-10-01T18:40:18-04:00 local): 'select (followup): selected None, stopped None, follow-up required False'",
  "value": "2026-10-01T22:40:18Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 413 (2026-10-01T18:40:20-04:00 local): 'stage confirm roster dev family site4'; first E7 stage that reads site4 (protein and cell types for the primary key, then RNA)",
  "value": "2026-10-01T22:40:20Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 817 (2026-10-01T18:54:05-04:00 local): 'site4 done: 400 cells'",
  "value": "2026-10-01T22:54:05Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 416 (2026-10-01T18:40:23-04:00 local): 'site4: device mps, float32'; the first site4 forward pass follows this line",
  "value": "2026-10-01T22:40:23Z"
 },
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  "source_file": "outputs/v3/E7/progress.log",
  "source_key": "line 414 (2026-10-01T18:40:22-04:00 local): 'site4 roster:'",
  "value": "2026-10-01T22:40:22Z"
 },
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  "source_file": "README.md",
  "source_key": "line 141",
  "value": 0.9603
 },
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  "source_file": "README.md",
  "source_key": "line 141",
  "value": [
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   3373
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 },
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  "source_file": "README.md",
  "source_key": "line 141",
  "value": 0.9428
 },
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  "source_file": "README.md",
  "source_key": "line 141",
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  "source_key": "line 141",
  "value": [
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   881,
   1796
  ]
 },
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  "source_file": "README.md",
  "source_key": "line 282 ('12.48%')",
  "value": 0.1248
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  "source_file": "README.md",
  "source_key": "line 152 ('32.6% of the site4 test cells')",
  "value": 0.326
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  "source_file": "README.md",
  "source_key": "line 143",
  "value": [
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 },
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  "source_file": "README.md",
  "source_key": "line 176",
  "value": 1690
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  "source_file": "README.md",
  "source_key": "line 176 (1,342 of 1,690 NK cells keyed 'myeloid' under the soft rule)",
  "value": 1342
 },
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  "source_file": "README.md",
  "source_key": "line 144",
  "value": [
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   1000
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 },
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  "source_file": "README.md",
  "source_key": "line 145 ('73-95% of the time')",
  "value": 0.73
 },
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  "source_file": "README.md",
  "source_key": "line 139",
  "value": 0.92663
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}